Online application

GenomeSeq

GenomeSeq gives research teams a secure, AI-supported workspace for organizing RNA-seq projects, running established workflows, and reviewing reproducible results.

Open GenomeSeq Request testing access

Limited testing access

GenomeSeq is not currently available as a free public service. It is in a testing phase, and access is provided to a limited number of testers upon request. Contact info@bioatlas.pro to request a registration code.

RNA-seq analysis in one secure workspace

Project and data management

Keep RNA-seq inputs, references, analysis settings, and outputs organized by project.

Create projects and manage single-end or paired-end samples.
Upload sequencing data and reference files securely.
Track analysis status and review project results.
Retain reproducibility information with each analysis.

Established RNA-seq pipelines

Choose a workflow appropriate for transcript quantification or alignment-based gene counting.

Quantify transcripts with Salmon.
Align reads with STAR and count features with featureCounts.
Use HISAT2 with featureCounts as an alternative alignment workflow.
Configure strandedness and other project-specific settings.

Quality control and guidance

Review quality outputs and use integrated guidance throughout the analysis process.

Run FastQC and optional fastp or Trim Galore preprocessing.
Review combined quality reports with MultiQC.
Download results and reproducibility bundles.
Use AI-supported assistance for RNA-seq and genomics questions.